Summary

Target folder: C:/Users/sean.rooney/Work/R/cod_tagging/alb_from_git

Timestamp: 2025-03-06 10:28:10.348223

Number of target tags: 20

Number of listed receivers: 15 (of which 1 had no detections)

Data time range: 2021-07-13 19:41:29 to 2021-10-15 11:55:01 (UTC).

Percentage of post-release valid detections: 100%

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Study area

Release sites are marked with “R.S.”. Arrays connected with an arrow indicate that the tags can only pass in one direction.

Receiver stations

Station.name Latitude Longitude Array Section Standard.name
OB9 57.88498 -152.6422 F Outer St.1
OB5 57.88735 -152.6625 E Outer St.2
OB1 57.89692 -152.6481 E Outer St.3
OB8 57.89667 -152.6392 E Outer St.4
IB4 57.87913 -152.6272 C Mid St.5
IB7 57.86427 -152.6227 A Head St.6
OB3 57.89268 -152.6545 E Outer St.7
OB2 57.89563 -152.6500 E Outer St.8
IB6 57.87172 -152.6442 B Head St.9
IB2 57.88633 -152.6271 D Mid St.10
IB1 57.88612 -152.6317 D Mid St.11
OB4 57.89018 -152.6586 E Outer St.12
OB6 57.88465 -152.6666 E Outer St.13
OB7 57.88230 -152.6721 E Outer St.14
IB3 57.87902 -152.6322 C Mid St.15

Deployments

Receiver Array Station.name Standard.name Start Stop
111440 F OB9 St.1 2021-07-10 09:00:00 2021-10-12 16:00:00
111441 E OB5 St.2 2021-07-10 09:00:00 2021-10-12 16:00:00
111442 E OB1 St.3 2021-07-10 09:00:00 2021-10-12 16:00:00
111443 E OB8 St.4 2021-07-10 09:00:00 2021-07-20 06:00:00
111444 C IB4 St.5 2021-07-12 09:00:00 2021-10-12 16:00:00
111445 A IB7 St.6 2021-07-12 09:00:00 2021-10-15 16:00:00
111446 E OB3 St.7 2021-07-10 09:00:00 2021-10-12 16:00:00
111447 E OB2 St.8 2021-07-10 09:00:00 2021-10-12 16:00:00
111448 B IB6 St.9 2021-07-12 09:00:00 2021-08-13 21:00:00
111450 D IB2 St.10 2021-07-12 09:00:00 2021-10-15 16:00:00
111900 D IB1 St.11 2021-07-12 09:00:00 2021-10-12 16:00:00
111901 E OB4 St.12 2021-07-10 09:00:00 2021-10-12 17:00:00
111902 E OB6 St.13 2021-07-10 09:00:00 2021-10-12 17:00:00
136779 E OB7 St.14 2021-07-10 09:00:00 2021-10-12 17:00:00
136780 C IB3 St.15 2021-07-12 09:00:00 2021-10-15 16:00:00

Release sites

Station.name Latitude Longitude Array Type Standard.name n.All
2 57.88560 -152.6324 C|D Release 2 1
3 57.88152 -152.6260 C|D Release 3 4
4 57.88287 -152.6263 C|D Release 4 1
1 57.87818 -152.6347 A|B|C Release 1 12
5 57.87584 -152.6289 A|B|C Release 5 2

Warning messages

Warning: GUI is set to 'needed' but package 'gWidgets2tcltk' is not available. Please install it if you intend to run the GUI. Disabling GUI (i.e. GUI = 'never') for the current run.
Warning: 'speed.warning'/'speed.error' were not set, skipping speed checks.
Warning: 'inactive.warning'/'inactive.error' were not set, skipping inactivity checks.

User comments

No comments were included during the analysis.

Biometric graphics

Note:
The data used in this graphic is the data present in the biometrics.csv file.

Average time of arrival at each Array

Note:
Coloured lines on the outer circle indicate the mean value for each group and the respective ranges show the standard error of the mean. Each group’s bars sum to 100%. The number of data points in each group is presented between brackets in the legend of each pannel.
You can replicate these graphics and edit them as needed using the plotTimes() function.
The data used in these graphics are stored in the times object.
To obtain reports with the legacy linear circular scale, run options(actel.circular.scale = "linear") before running your analyses.

Individual detection plots

Note:
You can choose to plot detections by station or by array using the detections.y.axis argument.
The detections are coloured by section. The vertical black dashed line shows the release time. The full dark-grey line shows the movement events considered valid, while the dashed dark-grey line shows the movement events considered invalid.
Manually edited tags are highlighted with yellow graphic borders.
The arrays have been aligned by section, following the order provided either in the spatial input or the section.order argument.
You can replicate these graphics and edit them as needed using the plotDetections() function.
You can also see the movement events of multiple tags simultaneously using the plotMoves() function.
The data used in these graphics are stored in the detections and movements objects (and respective valid counterparts).

Sensor plots

Note:
The colouring in these plots will follow that of the individual detection plots, which can be modified using detections.y.axis.
The data used for these graphics are stored in the valid.detections object.
You can replicate these graphics and edit them as needed using the plotSensors() function.

Full log

Actel R package report.
Version: 1.3.0.9019
Target folder: C:/Users/sean.rooney/Work/R/cod_tagging/alb_from_git
Timestamp: 2025-03-06 10:28:10.348223
Function: explore()

M: 'report' option has been activated.
M: Running analysis on preloaded data (compiled on 2025-03-06 10:21:30.713355).
Messages displayed during preload:
-------------------
Actel R package report.
Version: 1.3.0.9019
Target folder: C:/Users/sean.rooney/Work/R/cod_tagging/alb_from_git
Timestamp: 2025-03-06 10:09:41.757124
Function: preload()

M: Preloaded Release dates are already in POSIX format. Skipping timestamp format checks.
M: Number of target tags: 20.
M: Preloaded deployment times are already in POSIX format. Skipping timestamp format checks.
Warning: The 'Receiver' column in the detections is not of type integer. Attempting to convert.
Warning: The 'Sensor.Value' column in the detections is not of type numeric. Attempting to convert.
M: Multiple possible first arrays detected for release site '1'.
M: Multiple possible first arrays detected for release site '2'.
M: Multiple possible first arrays detected for release site '3'.
M: Multiple possible first arrays detected for release site '4'.
M: Multiple possible first arrays detected for release site '5'.
M: Matching detections with deployment periods.
Error: 3 detections for receiver 111441 do not fall within deployment periods.
Error: 64 detections for receiver 111442 do not fall within deployment periods.
Error: 100 detections for receiver 111443 do not fall within deployment periods.
Warning: 151 detections for receiver 111446
                do not fall within deployment periods. Discarding orphan detections.
Warning: 153 detections for receiver 111447
                do not fall within deployment periods. Discarding orphan detections.
Warning: 606 detections for receiver 111448
                do not fall within deployment periods. Discarding orphan detections.
Warning: 43 detections for receiver 111901
                do not fall within deployment periods. Discarding orphan detections.
M: Number of ALS: 15 (of which 1 had no detections)
Warning: No detections were found for receiver(s) 111440.
M: Data time range: 2021-07-13 19:41:29 to 2021-10-15 11:55:01 (UTC).
M: Data successfully imported!
-------------------
M: Creating movement records for the valid tags.
M: Checking movement events quality.
Warning: 'speed.warning'/'speed.error' were not set, skipping speed checks.
Warning: 'inactive.warning'/'inactive.error' were not set, skipping inactivity checks.
M: Filtering valid array movements.
M: Compiling circular times.
M: Saving results as 'actel_explore_results.RData'.
M: Producing the report.
M: Drawing individual detection graphics.
M: Printing sensor values for tags with sensor data.
M: Analysis completed!

-------------------
User interventions:
-------------------
y # save results?
-------------------
Preload function call:
-------------------
preload(biometrics = biometric, spatial = spatial, deployments = deployments, detections = detections_otn, dot = dot_string, distances = NULL, tz = 'UTC', start.time = NULL, stop.time = NULL, section.order = NULL, exclude.tags = NULL, disregard.parallels = FALSE, discard.orphans = FALSE)
-------------------
Explore function call:
-------------------
explore(tz = NULL, datapack = x, max.interval = 60, min.total.detections = 2, min.per.event = 1, start.time = NULL, stop.time = NULL, speed.method = c('last to first'), speed.warning = NULL, speed.error = NULL, jump.warning = 2, jump.error = 3, inactive.warning = NULL, inactive.error = NULL, exclude.tags = NULL, override = NULL, report = TRUE, discard.orphans = FALSE, discard.first = NULL, auto.open = TRUE, save.detections = FALSE, GUI = 'never', save.tables.locally = 'FALSE, print.releases = TRUE, detections.y.axis = 'auto')
-------------------

Index:

Summary Study area Stations Deployments Release sites Warnings Comments Biometrics Arrival times Individual detections Sensor data Full log